Posts in category "Algorithm"

Posts are organized into categories for ease of navigation:

• Algorithm - developments to the interpretation algorithm implemented in Python.
• Announcement - general news related to the Molecular Oncology Almanac.
• Database - changes and additions to the underlying knowledge base.
• Release - aggregated release notes from GitHub releases (serving as the project changelog).

• Algorithm release 0.8.3 2025-09-11 Categories:  Algorithm, Release

  This release utilizes the v.2025-09-02 version of the MOAlmanac database. It includes a fix to a bug that prevented HTML report generation. Specifically, in rare circumstances, the columns sensitive_score_bin_map, resistance_score_bin_map, and prognostic_score_bin_map were not added to the data object for actionable variants, which are used to sort report tables.

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• Algorithm release 0.8.2 2025-06-25 Categories:  Algorithm, Release

  This release utilizes the v.2025-02-07 release of the underlying MOAlmanac database. The codebase now supports Python 3.13 with no warnings produced, although we will continue officially using 3.12 for the time being.

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• Algorithm release 0.8.1 2025-02-07 Categories:  Algorithm, Release

  This release utilizes version 2025-02-07 of the underlying moalmanac database and contains changes from several pull requests: #32, #33, #35, and #36.

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• Algorithm release 0.8.0 2024-12-10 Categories:  Algorithm, Release

  This release utilizes the v.2024-12-05 version of the underlying database and contains changes from several pull requests: #27, #28, #29, #30, #31.

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• Algorithm release 0.7.2 2024-10-25 Categories:  Algorithm, Release

  This release utilizes the v.2024-10-03 release of the underlying MOAlmanac database and otherwise fixes two bugs present in Release 0.7.1. This release incorporates pull requests https://github.com/vanallenlab/moalmanac/pull/23 and https://github.com/vanallenlab/moalmanac/pull/24.

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• Algorithm release 0.7.1 2024-10-01 Categories:  Algorithm, Release

  This release utilizes the v.2024-04-11 release of the underlying MOAlmanac database and primarily focuses on adding logging to MOAlmanac and refactoring the codebase to remove the datasources/ directory from the application folder. It incorporates changes from two pull requests: https://github.com/vanallenlab/moalmanac/pull/21 and https://github.com/vanallenlab/moalmanac/pull/22.

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• Algorithm release 0.6.0 2024-05-31 Categories:  Algorithm, Release

  This release utilizes the v.2024-04-11 release of the underlying MOAlmanac database and primarily focuses on supporting Python 3.12. It incorporates changes from two pull requests: https://github.com/vanallenlab/moalmanac/pull/18 and https://github.com/vanallenlab/moalmanac/pull/19.

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• Algorithm release 0.5.0 2024-01-05 Categories:  Algorithm, Release

  This release utilizes the v.2023-11-09 release of the underlying MOAlmanac database and incorporates changes from three pull requests: #15: Added AIP to hereditary cancers gene list, #16: Update db nov 2023, and #17: Revise handling of COSMIC mutational signatures.

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• Algorithm release 0.4.6 2023-04-13 Categories:  Algorithm, Release

  This release utilizes the v.2023-04-06 release of the underlying MOAlmanac database. It incorporates changes from two pull requests: #13 and #14.

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• Algorithm release 0.4.5 2023-03-10 Categories:  Algorithm, Release

  This release utilizes the v.2023-02-02 release of the underlying MOAlmanac database. It incorporates changes from three pull requests: changing the underlying MOAlmanac database from TinyDB to JSON (#9), adding a simplified input option to run MOAlmanac (#10), and updating datasources (#11).

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• Algorithm release 0.4.2 2022-02-15 Categories:  Algorithm, Release

  This release utilizes the v.2021-02-04 release of the underlying MOAlmanac database.

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• Algorithm release 0.4.1 2021-05-01 Categories:  Algorithm, Release

  This release utilizes the v.2021-02-04 release of the underlying MOAlmanac database.

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